PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1157s0007.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family RAV
Protein Properties Length: 360aa    MW: 40327.6 Da    PI: 9.7962
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1157s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-1367115155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f   eeAa+ ++ a+++++g
  Cagra.1157s0007.1.p  67 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEQEEAARSYDIAALRFRG 115
                          89****9888.8*********3.....5*************************98 PP

2B3103.89.1e-33193296197
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+ tpsdv+k++rlv+pk++ae+h        ++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+
  Cagra.1157s0007.1.p 193 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpsqsPSPVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFE 282
                          89***************************99886666799************************************************** PP

                          E-SSSEE..EEEEE CS
                   B3  84 ldgrsefelvvkvf 97 
                          ++   +++l++ ++
  Cagra.1157s0007.1.p 283 RSTGLDRQLYIDWR 296
                          87667777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-867115IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1767124IPR016177DNA-binding domain
CDDcd000183.02E-2667122No hitNo description
SMARTSM003803.9E-3168129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2068123IPR001471AP2/ERF domain
PROSITE profilePS5103220.73268123IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.9E-41187299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-32190292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-29192284No hitNo description
PROSITE profilePS5086314.297193299IPR003340B3 DNA binding domain
SMARTSM010195.5E-28193299IPR003340B3 DNA binding domain
PfamPF023624.3E-30193296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSSCIEEIS SSTSESFSTT TAKKLSPPPP PPPATALRLY RMGSGGSSIV LDPENGVETE  60
SRKLPSSKYK GVVPQPNGRW GAQIYEKHQR VWLGTFNEQE EAARSYDIAA LRFRGRDAVV  120
NFKTLLEDGD LAFLEAHSKA EIVDMLRKHT YADELEQNNK RRLFLSLDAN GTQRNGSSMV  180
TNDNVLKTRE VLFEKAVTPS DVGKLNRLVI PKQHAEKHFP LPSQSPSPVT KGVLINFEDV  240
NGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLRAGDVVT FERSTGLDRQ LYIDWRVRSG  300
PRETPVQVVV RLFGVDIFNV NTVKPNDVVA VCGRKRSRDD ADDMFGLGCS KKQAIINAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-6219030011119DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0116650.0AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119140.0AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF3603120.0AF360312.1 Arabidopsis thaliana putative DNA-binding protein(RAV2 (At1g68840) mRNA, complete cds.
GenBankAY0563610.0AY056361.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g68840) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302450.10.0hypothetical protein CARUB_v10020536mg
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLR0IF200.0R0IF20_9BRAS; Uncharacterized protein
STRINGAT1G68840.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2